Case Studies
Case studies provide complete, reproducible workflows from data download to biological interpretation, demonstrating how scTypeEval can be used to assess and interpret cell type annotations in real datasets.
For method-focused, step-by-step guides on ISC metrics and workflow components, see Tutorials.
| Title | Description |
|---|---|
| Human Lung Cell Atlas (HLCA) reannotation with ISC | This case study reproduces the ISC-guided annotation refinement strategy presented for the Human Lung Cell Atlas (HLCA) in Figure 6 of the scTypeEval publication. This… |
| White adipose tissue atlas | In this case study, we evaluate the consistency of the cell type annotations provided by the authors of a white adipose tissue atlas. |
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