Installation

Install scTypeEval from Bioconductor (recommended) or GitHub, following the official package README.

Recommended: Bioconductor

# Bioconductor/devel install (R >= 4.6.0)
if (!requireNamespace("BiocManager", quietly = TRUE)) {
  install.packages("BiocManager")
}
BiocManager::install("scTypeEval")

Alternative: GitHub

# Install from GitHub (R >= 4.6.0)
if (!requireNamespace("remotes", quietly = TRUE)) {
  install.packages("remotes")
}

# Installing without @<tag> pulls the current GitHub branch
remotes::install_github("carmonalab/scTypeEval")

# Pre-release branch compatible with R >= 4.3.0
remotes::install_github("carmonalab/scTypeEval@R-4.3.0_prerelease")

Typical Install Time

• Only scTypeEval: ~10 seconds
• First-time Bioconductor install (with dependencies): typically ~5-10 minutes

System Requirements

• Supported operating systems: macOS, Linux, Windows
• Recommended R version: R >= 4.6.0
• Pre-release option available for R >= 4.3.0 (R-4.3.0_prerelease)